Ok, maybe I installed the controller wrong but man is this thing a mess.  
 
My problems:  
 
1. Left stick click = pause 
2. Start button doesn't work 
3. RB throws to second 
4. Y throws to third  
5. While pitching X brings up a roster screen 
 
 
Does anyone know how to get around all this, or are we all having the same problems?  
 
Kraw, is this the same problems you have?